Single enzyme mass spectrometry identification/analysis and sequence analysis of single enzymes are frequently encountered problems in biological research. Mass spectrometry-based acquisition of enzyme sequence information and mass spectrometry identification by mass spectrometry, mass spectrometry identification based on protein profiling by LC-MS. Common analyses include: protein molecular weight determination by mass spectrometry, N-terminal and C-terminal sequencing of proteins, protein sequence analysis and post-translational modification site analysis, etc.
First, the enzyme samples are reduced with dithiothreitol (DTT) and alkylated with iodoacetamide (IAA). Then the samples are digested with trypsin, and generally the samples are broken after lysine and arginine residues. Finally, the peptide fragments are obtained by lyophilization.
The samples were re-solubilized with the A-phase of NanoLC and then uploaded for analysis under NanoLC-MS/MS system.
The proteomic database of the corresponding species is downloaded from UniProt according to the source of the sample species, and the data obtained from the LC-MS is matched with the data in the database using software such as MaxQuant, Proteome Discoverer, Peaks, etc.
The identification report will include details of the sample pre-processing steps, chromatography-mass spectrometry platform parameters, and a list of the proteins and peptides identified. The raw mass spectrometry data will be made available on a web site.
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